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FlowDeploy
Mountain View, CA, United States
About FlowDeploy FlowDeploy builds dev tools for bioinformatics, and we're looking for a bioinformatics engineer. Our core product is a platform to run bioinformatics pipelines and manage data. We're a very small team, and we plan to stay small until we have strong product-market fit. We're funded by Y Combinator and other notable investors, Fl
Job Source: FlowDeployElegen
San Carlos, CA, United States
We are looking for a bioinformatics scientist to create quantitative and incisive analyses of DNA sequence attributes and NGS data. The role will include opportunities to develop analyses ranging from early-stage research experiments to production pipelines and databases. The scientist will work closely with molecular biologists as well as the scie
Job Source: ElegenSoftWash Systems - Advantage SoftWash
Palo Alto, CA, United States
The Chan Zuckerberg Biohub San Francisco (CZ Biohub SF) (https://www.czbiohub.org/sf/) is an independent nonprofit research institute that brings together three powerhouse universities - Stanford, UC Berkeley, and UC San Francisco - into a single collaborative technology and discovery engine. CZ Biohub SF itself supports some of the brightest, bold
Job Source: SoftWash Systems - Advantage SoftWashCreative Solutions Services, LLC
San Carlos, CA, United States
JOB TITLE: Scientific Computing Specialist **TOP 3 SKILLS:** - Bioinformatics - Python, Unix, & Distributed Computing - Biotech / Pharma / or Scientific background LOCATION: Silicon Valley DURATION: 6 month extendable assignment RATE RANGE: $100-$120/hr SUMMARY: Scientific Computing Specialist (Biotech): Be a Founding Force in Scientific Softwar
Job Source: Creative Solutions Services, LLCBoost Biomes
Brisbane, CA, United States
[Full Time] Bioinformatics Scientist at Boost Biomes (United States) | BEAMSTART Jobs Bioinformatics Scientist Boost Biomes United States Date Posted 10 Jan, 2023 Work Location Brisbane, CA, United States Salary Offered $100000 — $250000 yearly Job Type Full Time Experience Required 3+ years Remote Work Yes Stock Options No Vacancies 1 availa
Job Source: Boost BiomesFlowDeploy
Mountain View, CA, United States
About FlowDeploy FlowDeploy builds dev tools for bioinformatics, and we're looking for a software engineer who is interested in computational biology. Our core product is a platform to run bioinformatics pipelines and manage data. We're a very small team, and we plan to stay small until we have strong product-market fit. We're funded by Y Combi
Job Source: FlowDeployStanford Blood Center
Palo Alto, CA, United States
Stanford Center for Genomics and Personalized Medicine (SCGPM), situated in the heart of SF Bay Area, has an excellent opportunity available for a motivated bioinformatician. This position within our bioinformatics core team will support bioinformatics consulting services for faculty and researchers via the Genetics Bioinformatics Service Center (G
Job Source: Stanford Blood CenterTempus Labs, Inc.
Redwood City, CA, United States
Passionate about precision medicine and advancing the healthcare industry? Recent advancements in underlying technology have finally made it possible for AI to impact clinical care in a meaningful way. Tempus' proprietary platform connects an entire ecosystem of real-world evidence to deliver real-time, actionable insights to physicians, providing
Job Source: Tempus Labs, Inc.Redwood City, CA, United States
Revolution Medicines is a clinical-stage precision oncology company focused on developing novel targeted therapies to inhibit frontier targets in RAS-addicted cancers. The company's R&D pipeline comprises RAS(ON) Inhibitors designed to suppress diverse oncogenic variants of RAS proteins, and RAS Companion Inhibitors for use in combination treatment strategies. As a new member of the Revolution Medicines team, you will join other outstanding professionals in a tireless commitment to patients with cancers harboring mutations in the RAS signaling pathway.
The Opportunity:
In this role, you will work within our Translational Medicine group transferring, organizing, curating and disseminating biomarker data from clinical trial samples. This incoming data consists of a diverse mix of next-generation sequencing, downstream variant calls, imaging, and other molecular assay outputs. The bioinformatics data engineer will work on various projects in different phases of drug development and contribute to the cross-functional bioinformatics team which includes other bioinformaticians and data scientists. As a Bioinformatics Data Engineerin Translational Medicine, you will:
Act as a main liaison between internal scientists and external molecular diagnostic providers.
Be the primary point of contact for the data transfer process, establishing connections between our cloud storage and external file shares.
Help develop scripts and processes to clean, upload and accession biomarker data from clinical trails into internal systems for further analysis.
Carry out data modeling and curation to ensure data quality and relevance.
Collaborate with other departments to share and disseminate data in a controlled and documented manner.
Develop web-based data visualization dashboards using python and R frameworks.
Use and modify data analysis pipelines using nextflow and WDL.
Required Experience, Skills, and Education:
Master's or bachelor's degree with 3+ years' experience in biology/computer science related field.
Expertise using linux clusters, cloud computing and file systems.
Proficient in designing and querying databases using SQL and object-relational mapping techniques.
Skilled in utilizing Python and R for data manipulation and analysis.
Strong familiarity with bioinformatics data types and outputs.
Excellent communication skills, enabling effective collaboration and conveying technical information clearly to diverse audiences.
Preferred Experience, Skills, and Education:
Experience using visualization packages such as R Shiny, PowerBI or similar systems.
Experience in biomarker data analysis and bioinformatics.
Familiarity with large genomic data sets (GDC, TCGA, etc.).
Experience in tools to analyze cancer genomics datasets (GATK, Salmon, OncoKB, VEP, etc.).
Development experience in groups using IDE's, a ticketing system and software control systems (GIT).
The expected salary range for this role is $120,000 to $145,000. An individual's position within the range may be influenced by multiple factors, including skills and experience in role, overall performance, individual impact and contributions, tenure, and market dynamics. Base salary is one part of the overall total rewards program at RevMed, which includes competitive cash compensation, robust equity awards, strong benefits, and significant learning and development opportunities.
Revolution Medicines is an equal opportunity employer and prohibits unlawful discrimination based on race, color, religion, gender, sexual orientation, gender identity/expression, national origin/ancestry, age, disability, marital status, medical condition, and veteran status.
Revolution Medicines takes protection and security of personal data very seriously and respects your right to privacy while using our website and when contacting us by email or phone. We will only collect, process and use any personal data that you provide to us in accordance with our CCPA Notice and Privacy Policy. For additional information, please contact [email protected].
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Email Alert for Bioinformatics Data Engineer jobs in Redwood City, CA, United States
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